Welcome to the OPATs website

Introduction:

OPATs (Omnibus P-value Association Tests), programmed in R and R GUI and featured by user-friendly interfaces, is an integrated analysis tool for identifying disease-associated genomic segments, functional genes, and biological pathways in genome-wide association studies. In addition to analysis modules for data quality control and single-locus association tests, OPATs provides three types of set-based association test: window-based association test (WBAT), gene-based association test (GBAT), and biopathway-based association test (BBAT). The significance of a set-based association test was evaluated by using resampling procedures.

Contact:

Please kindly acknowledge if you have downloaded OPATs. We will inform you the update of OPATs. Any questions, comments and suggestions on OPATs are welcome. Please send your feedback to hsinchou@stat.sinica.edu.tw.

Download:

VERSION	DOWNLOAD LINKS	FILE TYPE	FILE SIZE	UPDATE
OPATs 1.0.1	Software	ZIP	2.20 MB	2021-03-15
OPATs 1.0	Software	RAR	2.21 MB	2017-05-13
	User Guide	PDF	760 KB	2017-05-13

Required tools: (1) R language; (2) Rtools (for Windows only); (3) ActiveTcl; (4) PLINK